Build and analyze genome-scale constraint-based metabolic models with COBRApy — flux balance analysis (FBA), flux variability analysis (FVA), gene and reaction knockouts, flux sampling, and SBML model I/O. Use when simulating metabolic networks, predicting growth or knockout phenotypes, or running systems-biology and metabolic-engineering analyses on SBML genome-scale models.
Install
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-cobrapynpx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-cobrapy -a claude-code -gnpx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-cobrapy -a codex -ggemini skills install https://github.com/AlterLab-IEU/AlterLab-Academic-Skills.git --path skills/bioinformatics/alterlab-cobrapygh skill install AlterLab-IEU/AlterLab-Academic-Skills alterlab-cobrapygit clone --depth 1 https://github.com/AlterLab-IEU/AlterLab-Academic-Skills /tmp/AlterLab-IEU__AlterLab-Academic-Skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-cobrapy ~/.claude/skills/alterlab-cobrapy # Claude Code
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-cobrapy ~/.agents/skills/alterlab-cobrapy # Codex, Cursor, Gemini CLI, Copilot, OpenCode