Run RNA velocity analysis with scVelo on single-cell RNA-seq data — estimate cell-state transitions from spliced/unspliced mRNA dynamics, infer trajectory direction, compute latent time, and identify driver genes.
Install
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-scvelonpx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-scvelo -a claude-code -gnpx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-scvelo -a codex -ggemini skills install https://github.com/AlterLab-IEU/AlterLab-Academic-Skills.git --path skills/bioinformatics/alterlab-scvelogh skill install AlterLab-IEU/AlterLab-Academic-Skills alterlab-scvelogit clone --depth 1 https://github.com/AlterLab-IEU/AlterLab-Academic-Skills /tmp/AlterLab-IEU__AlterLab-Academic-Skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-scvelo ~/.claude/skills/alterlab-scvelo # Claude Code
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-scvelo ~/.agents/skills/alterlab-scvelo # Codex, Cursor, Gemini CLI, Copilot, OpenCode