Alterlab Scvi Tools

AlterLab Creative Technologies Laboratory

Train deep generative models for single-cell omics with scvi-tools — probabilistic batch correction and integration (scVI), reference-mapping transfer learning (scArches), differential expression with uncertainty, and multimodal models (totalVI for CITE-seq, MultiVI for multiome).

Install

npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-scvi-tools

npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-scvi-tools -a claude-code -g

npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-scvi-tools -a codex -g

gemini skills install https://github.com/AlterLab-IEU/AlterLab-Academic-Skills.git --path skills/bioinformatics/alterlab-scvi-tools

gh skill install AlterLab-IEU/AlterLab-Academic-Skills alterlab-scvi-tools

git clone --depth 1 https://github.com/AlterLab-IEU/AlterLab-Academic-Skills /tmp/AlterLab-IEU__AlterLab-Academic-Skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-scvi-tools ~/.claude/skills/alterlab-scvi-tools   # Claude Code
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-scvi-tools ~/.agents/skills/alterlab-scvi-tools   # Codex, Cursor, Gemini CLI, Copilot, OpenCode

Install

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