Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill anndatanpx skills add K-Dense-AI/scientific-agent-skills --skill anndata -a claude-code -gnpx skills add K-Dense-AI/scientific-agent-skills --skill anndata -a codex -ggemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/anndatagh skill install K-Dense-AI/scientific-agent-skills anndatagit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills /tmp/K-Dense-AI__scientific-agent-skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/anndata ~/.claude/skills/anndata # Claude Code
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/anndata ~/.agents/skills/anndata # Codex, Cursor, Gemini CLI, Copilot, OpenCode