Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
Install
npx skills add davila7/claude-code-templates --skill arboretonpx skills add davila7/claude-code-templates --skill arboreto -a claude-code -gnpx skills add davila7/claude-code-templates --skill arboreto -a codex -ggemini skills install https://github.com/davila7/claude-code-templates.git --path cli-tool/components/skills/scientific/arboretogh skill install davila7/claude-code-templates arboretogit clone --depth 1 https://github.com/davila7/claude-code-templates /tmp/davila7__claude-code-templates
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/arboreto ~/.claude/skills/arboreto # Claude Code
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/arboreto ~/.agents/skills/arboreto # Codex, Cursor, Gemini CLI, Copilot, OpenCode