Runs reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and measurement QC for 2D fluorescence assays.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill cellprofilernpx skills add K-Dense-AI/scientific-agent-skills --skill cellprofiler -a claude-code -gnpx skills add K-Dense-AI/scientific-agent-skills --skill cellprofiler -a codex -ggemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/cellprofilergh skill install K-Dense-AI/scientific-agent-skills cellprofilergit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills /tmp/K-Dense-AI__scientific-agent-skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/cellprofiler ~/.claude/skills/cellprofiler # Claude Code
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/cellprofiler ~/.agents/skills/cellprofiler # Codex, Cursor, Gemini CLI, Copilot, OpenCode