Agent runbook for evaluating an existing PDB directory through the separately installed first-party Proteina-Complexa CLI. Use to refold or score designs, compute interface pAE, i_pLDDT, scRMSD, motif RMSD, or designability, run complexa analysis, or assess third-party BindCraft, AlphaProteo, or RFdiffusion outputs.
Install
npx skills add NVIDIA/skills --skill complexa-evaluate-pdbsnpx skills add NVIDIA/skills --skill complexa-evaluate-pdbs -a claude-code -gnpx skills add NVIDIA/skills --skill complexa-evaluate-pdbs -a codex -ggemini skills install https://github.com/NVIDIA/skills.git --path skills/bionemo-complexa-evaluate-pdbsgh skill install NVIDIA/skills complexa-evaluate-pdbsgit clone --depth 1 https://github.com/NVIDIA/skills /tmp/NVIDIA__skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/NVIDIA__skills/skills/bionemo-complexa-evaluate-pdbs ~/.claude/skills/complexa-evaluate-pdbs # Claude Code
cp -R /tmp/NVIDIA__skills/skills/bionemo-complexa-evaluate-pdbs ~/.agents/skills/complexa-evaluate-pdbs # Codex, Cursor, Gemini CLI, Copilot, OpenCode