Generates transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Used for predicted log1p-CPM expression from 224x224 tiles at about 20x, querying the released protein-coding gene panel by symbol, and whole-slide prediction after resolution-aware tiling with histolab.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill deepspot-mnpx skills add K-Dense-AI/scientific-agent-skills --skill deepspot-m -a claude-code -gnpx skills add K-Dense-AI/scientific-agent-skills --skill deepspot-m -a codex -ggemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/deepspot-mgh skill install K-Dense-AI/scientific-agent-skills deepspot-mgit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills /tmp/K-Dense-AI__scientific-agent-skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/deepspot-m ~/.claude/skills/deepspot-m # Claude Code
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/deepspot-m ~/.agents/skills/deepspot-m # Codex, Cursor, Gemini CLI, Copilot, OpenCode