Analyzes flow cytometry data with FlowKit, including spillover compensation, logicle and biexponential transforms, hierarchical gating, GatingML strategies, and supported FlowJo 10 workspaces. Use for reproducible gate counts, population percentages, gated fluorescence summaries, or reproducing a FlowJo analysis in Python. For FCS metadata inspection or file-format repair alone, use FlowIO.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill flowkitnpx skills add K-Dense-AI/scientific-agent-skills --skill flowkit -a claude-code -gnpx skills add K-Dense-AI/scientific-agent-skills --skill flowkit -a codex -ggemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/flowkitgh skill install K-Dense-AI/scientific-agent-skills flowkitgit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills /tmp/K-Dense-AI__scientific-agent-skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/flowkit ~/.claude/skills/flowkit # Claude Code
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/flowkit ~/.agents/skills/flowkit # Codex, Cursor, Gemini CLI, Copilot, OpenCode