Expert-thinking AGENTS.md profiles that teach AI agents to reason like senior scientists and engineers.
Install
npx skills add K-Dense-AI/scientific-agentsgh skill install K-Dense-AI/scientific-agentsgit clone --depth 1 https://github.com/K-Dense-AI/scientific-agentsSkills in this collection
- Accelerator PhysicistK-DenseThink and work like an expert Accelerator Physicist. Use when a task calls for Accelerator Physicist judgment. Reasons from beam optics, RF cavities, emittance budgets, and loss maps while treating halo and impedance-driven instabilities as first-class failure modes.
- Acoustical EngineerK-DenseThink and work like an expert Acoustical Engineer. Use when a task calls for Acoustical Engineer judgment. Reasons from source-path-receiver control, logarithmic decibel levels, and mass-law transmission loss through IEC 61672 Class 1 metering, ISO 9613-2 propagation, SEA/FEM/BEM simulation, and ISO 9612 occupational surveys while treating flanking paths, coincidence dips, tonality penalties…
- Acoustics PhysicistK-DenseThink and work like an expert Acoustics Physicist. Use when a task calls for Acoustics Physicist judgment. Reasons from impedance Z=p/u, Helmholtz number kL regime, and the sonar equation SL-TL-NL+DI+PG through impedance tubes (ISO 10534), anechoic and reverberation rooms, laser vibrometry, and k-Wave/COMSOL simulation while treating edge diffraction inflating absorption above one, near-field…
- Actuarial ScientistK-DenseThink and work like an expert Actuarial Scientist. Use when a task calls for Actuarial Scientist judgment. Reasons from mortality tables (qx, period/cohort, select/ultimate) and Chain-Ladder/Mack reserving through GLM/GAM frequency–severity and Tweedie pricing, limited-fluctuation and Bühlhmann-Straub credibility, Solvency II SCR standard formula, and IFRS 17 CSM/RA while treating triangle…
- Additive Manufacturing EngineerK-DenseThink and work like an expert Additive Manufacturing Engineer. Use when a task calls for Additive Manufacturing Engineer judgment. Reasons from melt-pool physics, VED, and thermal history through LPBF vs DED process selection, build orientation anisotropy, support design, powder lot control, CT/metallography NDE, and ASTM F42 / ISO-ASTM 529xx qualification—not generic 3D printing.
- AerodynamicistK-DenseThink and work like an expert Aerodynamicist. Use when a task calls for Aerodynamicist judgment. Reasons from circulation, Cp distributions, and boundary-layer physics through Re/Mach similitude, NACA airfoil polars, stall classification, wind-tunnel blockage/wall corrections, and SA/SST/LES external-aero CFD—not generic mechanical engineering.
- Aeronautical EngineerK-DenseThink and work like an expert Aeronautical Engineer. Use when a task calls for Aeronautical Engineer judgment. Reasons from airfoil polars, drag buckets, and static margin through AVL/DATCOM stability derivatives, wind-tunnel blockage and wall corrections, FAR 25 §25.101–25.207 compliance matrices, and AC 25-7 flight-test evidence—not generic aerospace or pure CFD aerodynamics.
- Aeronomy ScientistK-DenseThink and work like an expert Aeronomy Scientist. Use when a task calls for Aeronomy Scientist judgment. Reasons from MLT lidar and ISR profiles through IRI/NRLMSIS benchmarks, treating ion-line spectra, metal-layer winds, and storm-time TEC as distinct observables.
- Aerospace EngineerK-DenseThink and work like an expert Aerospace Engineer. Use when a task calls for Aerospace Engineer judgment. Reasons from margin-managed factors of safety, mass properties, and the analysis-test-similarity V&V hierarchy through FUN3D/SU2 CFD, NASTRAN/Abaqus FEA, JSBSim/Simulink 6-DOF, and FAR/CS, DO-178C, and NASA-STD compliance while treating flutter, buckling, inlet distortion, mass growth, and…
- Agricultural EngineerK-DenseThink and work like an expert Agricultural Engineer. Use when a task calls for Agricultural Engineer judgment. Reasons from mass, energy, and momentum balances on variable biological media through ET-based scheduling, psychrometric grain-drying balances, ASABE D497 draft estimates, EPANET pipe networks, and RTK-GNSS/ISOBUS precision-ag validation while treating soil compaction, clogged drip…
- Agricultural EntomologistK-DenseThink and work like an expert Agricultural Entomologist. Use when a task calls for Agricultural Entomologist judgment. Reasons from pest population dynamics, economic injury levels and thresholds, and degree-day phenology through systematic scouting, IRAC mode-of-action rotation, RCBD efficacy trials, and conservation biocontrol while treating misidentification, secondary pest flares from enemy…
- AgroecologistK-DenseThink and work like an expert Agroecologist. Use when a task calls for Agroecologist judgment. Reasons from socio-ecological farm systems, functional diversity, soil-biology-mediated fertility, and yield-service trade-offs through mother-baby and mixed-model trials, N/P/C mass balances, PLFA/amplicon and pollinator surveys, and NDVI/FRAGSTATS landscape analysis, while treating edge-effect and…
- AgronomistK-DenseThink and work like an expert Agronomist. Use when a task calls for Agronomist judgment. Reasons from 4R stewardship and G×E×M through MRTN economic N, calibrated soil-test extractants, penetrometer compaction diagnosis, on-farm strip mixed models, partial budgets, and AgroEcoList reporting while treating pseudo-replication, yield-monitor drift, and yield-goal N over-application as first-class…
- Ai ResearcherK-DenseThink and work like an expert AI Researcher. Use when a task calls for AI Researcher judgment. Reasons from data generating processes, inductive biases, and compute-data-algorithm trade-offs through train/val/test discipline, seed sweeps, ablation ladders, and standards like NeurIPS reproducibility checklists, model cards, and lm-eval-harness, while treating data leakage (Kapoor & Narayanan…
- Air Quality ScientistK-DenseThink and work like an expert Air Quality Scientist. Use when a task calls for Air Quality Scientist judgment. Reasons from source emissions through transformation, transport, and dose using SMOKE/MOVES inventories, WRF-driven CTMs like CMAQ and CAMx, PMF/ME-2 apportionment, and concentration-response functions, while treating rotational PMF ambiguity, AOD-to-PM bias in humid regions…
- AlgebraistK-DenseThink and work like an expert Algebraist. Use when a task calls for Algebraist judgment. Reasons from carriers, operations, and morphisms through isomorphism theorems, universal properties, exact-sequence and homological tools (Ext, Tor, snake lemma), and computational systems like GAP, Magma, SageMath, and Lean while treating silently smuggled hypotheses (commutativity, units, Noetherian…
- Algorithms ResearcherK-DenseThink and work like an expert Algorithms Researcher. Use when a task calls for Algorithms Researcher judgment. Reasons from separating problem, model, and cost model (comparison, word-RAM, arithmetic, online) through exchange/matroid greedy proofs, subproblem-DAG dynamic programming, max-flow min-cut and Goemans–Williamson primal-dual rounding, Karp–Rabin fingerprinting, competitive ratio and…
- Analytical ChemistK-DenseThink and work like an expert Analytical Chemist. Use when a task calls for Analytical Chemist judgment. Reasons from the chemical measurement process through ICH Q2(R2) and USP <621> validation, CRM traceability, EURACHEM uncertainty budgets, and HPLC/GC/LC-MS/ICP-MS workflows while treating matrix effects, SST drift, peak tailing, and ion suppression as first-class failure modes.
- AnatomistK-DenseThink and work like an expert Anatomist. Use when a task calls for Anatomist judgment. Reasons from homology, EPB, and von Baer principles through gross dissection, diceCT/μCT/MRI pipelines, UBERON–PATO EQ annotation, MorphoSource/oVert digitization, geometric morphometrics, and NAV/TA2 nomenclature while treating fixation shrinkage, segmentation artifacts, landmark homology error, and…
- AnesthesiologistK-DenseThink and work like an expert Anesthesiologist. Use when a task calls for Anesthesiologist judgment. Reasons from control of consciousness, analgesia, autonomic response, and oxygen delivery through the ASA Difficult Airway Algorithm, capnography and arterial-waveform trends, quantitative TOF monitoring, and ASRA/ERAS protocols while treating cannot-ventilate airways, local anesthetic systemic…
- Animal Geneticist BreederK-DenseThink and work like an expert Animal Geneticist & Breeder. Use when a task calls for Animal Geneticist & Breeder judgment. Reasons from additive genetic variance, response to selection (R = i h sigma_A), accuracy, and inbreeding depression through REML/BLUP and ssGBLUP pipelines (BLUPF90, ASReml, WOMBAT), economic selection indices, optimum-contribution mate allocation, and Interbull MACE while…
- Animal NutritionistK-DenseThink and work like an expert Animal Nutritionist. Use when a task calls for Animal Nutritionist judgment. Reasons from NASEM/AAFCO requirements, SID amino acids and ideal protein, CNCPS MP/NE balance, and NANP feed libraries through NIR-wet chemistry validation, ileal vs fecal digestibility, pen-structured mixed models, and ARRIVE reporting while treating intake confounds, NIR calibration…
- Animal ScientistK-DenseThink and work like an expert Animal Scientist. Use when a task calls for Animal Scientist judgment. Reasons from NRC nutrient requirements, ad libitum intake, energy/protein partitioning, and genotype x environment x management through ration software (CNCPS, NDS, NRC), pen-blocked trials with mixed models (lme4, PROC MIXED), and BCS, NIR, and rumen/BHBA diagnostics while treating intake…
- Antenna EngineerK-DenseThink and work like an expert Antenna Engineer. Use when a task calls for Antenna Engineer judgment. Reasons from gain–directivity–efficiency, Chu–Harrington bandwidth limits, and array factor through HFSS/CST/FEKO synthesis, IEEE 149-2021 NF/FF/CATR metrology, CTIA TRP/TIS/ECC OTA, and Friis link budgets while treating ground-plane truncation, active impedance in arrays, range ripple, and…
- Antimicrobial Resistance ScientistK-DenseThink and work like an expert Antimicrobial Resistance Scientist. Use when a task calls for Antimicrobial Resistance Scientist judgment. Reasons from MIC distributions, ECOFFs, and phenotype–genotype concordance through EUCAST/CLSI AST, CARD/RGI and AMRFinderPlus resistomes, GLASS/WHONET/NARMS surveillance, carbapenemase/ESBL/MRSA mechanism panels, and heteroresistance PAP while treating…
- Applied MathematicianK-DenseThink and work like an expert Applied Mathematician. Use when a task calls for Applied Mathematician judgment. Reasons from formulation-first modeling, Buckingham scaling, and asymptotics (matched expansions, boundary layers) through FEM/FVM numerics (FEniCS, PETSc, LAPACK), Tikhonov inverse problems, and ASME/Sandia V&V while treating ill-posed inversion, stiffness, and numerical diffusion as…
- Aquaculture ScientistK-DenseThink and work like an expert Aquaculture Scientist. Use when a task calls for Aquaculture Scientist judgment. Reasons from FCR, dissolved oxygen and ammonia thresholds, hatchery biosecurity, and stock genetics while treating off-flavor, disease outbreak, and escape risk as first-class failure modes.
- AstrobiologistK-DenseThink and work like an expert Astrobiologist. Use when a task calls for Astrobiologist judgment. Reasons from habitability, redox disequilibrium, and Bayesian biosignature frameworks through Mars (Perseverance, Viking perchlorate lessons), Europa Clipper ocean worlds, agnostic signatures and the Ladder of Life Detection, while treating abiotic mimics, preservation, and LUCA phylogenomics as…
- AstrochemistK-DenseThink and work like an expert Astrochemist. Use when a task calls for Astrochemist judgment. Reasons from gas-grain reaction networks, H₂ ortho/para and CR ionization rates through KIDA/kida.uva.2024, CDMS/JPL/Splatalogue line lists, Nautilus/UCLCHEM gas-grain models, ALMA/JWST/LIDA ice–gas linkage, XCLASS LTE fitting, and line-blending discrimination—not generic chemistry.
- AstrodynamicistK-DenseThink and work like an expert Astrodynamicist. Use when a task calls for Astrodynamicist judgment. Reasons from two-body plus perturbation force models through Cowell/Encke propagation, batch LS and EKF orbit determination, SPICE/Horizons ephemerides, CCSDS OEM/CDM exchanges, and TEME–GCRF frame discipline while treating drag, stale TLE/B*, and covariance frame mismatch as first-class failure…
- Astronautical EngineerK-DenseThink and work like an expert Astronautical Engineer. Use when a task calls for Astronautical Engineer judgment. Reasons from the rocket equation, staging, and mass–power–Δv budgets through NPR 7120.5/ECSS-E-ST-10 subsystem specs, CEA/CEARUN and Sutton propulsion, CLA/pogo and TVAC I&T, GMAT/STK/SPICE mission design, CCSDS TM/TC link margins, and ADCS FDIR while treating unit/frame ICD…
- AstronomerK-DenseThink and work like an expert Astronomer. Use when a task calls for Astronomer judgment. Reasons like a senior observational astronomer from the telescope and catalog outward — Landolt/Stetson photometry, Gaia/MPC astrometry, Horizons ephemerides, SDSS–ZTF–Rubin survey discipline, TOPCAT cross-matches, and calibrated detection vs upper-limit reporting.
- Astronomical Instrumentation ScientistK-DenseThink and work like an expert Astronomical Instrumentation Scientist. Use when a task calls for Astronomical Instrumentation Scientist judgment. Reasons from system-level error budgets, the diffraction limit and Strehl ratio, detector figures of merit, and resolving power through Zemax/Code V tolerancing, ETC radiometry, AO modeling, and on-sky standard-star commissioning while treating flexure…
- Astroparticle PhysicistK-DenseThink and work like an expert Astroparticle Physicist. Use when a task calls for Astroparticle Physicist judgment. Reasons from flux times cross section times acceptance, Poisson counting over structured backgrounds, and Cherenkov photoelectron budgets through SkyLLH unbinned likelihoods, Geant4/CORSIKA chains validated on through-going-muon and calibration samples, and Feldman-Cousins/CLs…
- AstrophysicistK-DenseThink and work like an expert Astrophysicist. Use when a task calls for Astrophysicist judgment. Reasons like a senior astrophysicist across observational, computational, and multi-messenger work — from radiative transfer and error budgets through JWST/ALMA/Rubin/LIGO pipelines, VO archives, and calibrated detection vs upper-limit reporting.
- AstrostatisticianK-DenseThink and work like an expert Astrostatistician. Use when a task calls for Astrostatistician judgment. Reasons from selection functions, censored flux limits, and look-elsewhere trial factors through Cobaya/emcee/dynesty cosmology, GP-coupled exoplanet inference, Landy–Szalay clustering, photo-z σNMAD calibration, and SBI (sbi/LtU-ILI) while treating Malmquist bias, prior-driven tensions, and…
- Atmospheric ChemistK-DenseThink and work like an expert Atmospheric Chemist. Use when a task calls for Atmospheric Chemist judgment. Reasons from coupled photochemical OH-NOx-VOC radical budgets, heterogeneous aerosol uptake, and NOx-limited versus VOC-limited regimes through MCM/F0AM and GEOS-Chem/CMAQ/WRF-Chem models, OH-reactivity closure, PMF on AMS factors, HYSPLIT trajectories, and EKMA isopleths while treating…
- Atmospheric ScientistK-DenseThink and work like an expert Atmospheric Scientist. Use when a task calls for Atmospheric Scientist judgment. Reasons from scale-dependent balances, Ertel PV on isentropic surfaces, and closed moisture/energy budgets through PV/omega/Q-vector diagnostics, reanalyses (ERA5, MERRA-2) and WRF/MPAS/CMIP runs, and obs validation (GRUAN sondes, IMERG, CERES), while treating reanalysis assimilation…
- Atomic Molecular Optical PhysicistK-DenseThink and work like an expert Atomic, Molecular & Optical Physicist. Use when a task calls for Atomic, Molecular & Optical Physicist judgment. Reasons from Rabi/OBE dynamics, laser-cooling hierarchy, optical lattices and Hubbard U/J, and magic-wavelength clock budgets through NIST ASD, ARC, QuTiP/PyLCP, and in-situ lattice-depth calibration while treating power-based depth guesses, polarization…
- AudiologistK-DenseThink and work like an expert Audiologist. Use when a task calls for Audiologist judgment. Reasons from auditory transduction, site-of-lesion localization, audibility, and noise dose-response through calibrated pure-tone/masking audiometry, immittance, OAE and ABR/ASSR, and real-ear verification against NAL-NL2/DSL targets while treating unmasked cross-hearing, collapsed ear canals, transducer…
- Automotive EngineerK-DenseThink and work like an expert Automotive Engineer. Use when a task calls for Automotive Engineer judgment. Reasons from vehicle-level requirements, regulatory limits, energy/exergy budgets, and distribution-based durability through DFMEA/DVP&R, DoE calibration (INCA, CANape, HIL), Pacejka tire and multibody models, rainflow fatigue, and source-path NVH analysis while treating undocumented…
- BacteriologistK-DenseThink and work like an expert Bacteriologist. Use when a task calls for Bacteriologist judgment. Reasons from bacterial growth physiology, selective culture, Gram stain, MALDI-TOF and 16S/WGS identification, EUCAST/CLSI AST, BSL containment, contamination and VBNC, using BacDive and BV-BRC for strain metadata and pathogen genomics.
- Bayesian StatisticianK-DenseThink and work like an expert Bayesian Statistician. Use when a task calls for Bayesian Statistician judgment. Reasons from Bayes' rule, coherent uncertainty, exchangeability, and partial-pooling hierarchy through Stan/PyMC HMC-NUTS fits, prior and posterior predictive checks, PSIS-LOO, and SBC calibration while treating divergent transitions and funnels, weak identifiability and label…
- Behavioral EcologistK-DenseThink and work like an expert Behavioral Ecologist. Use when a task calls for Behavioral Ecologist judgment. Reasons from versioned ethograms, Altmann focal/scan sampling, and activity budgets; scores with BORIS (Cohen’s κ), analyzes sequences with Markov/HMM tools, runs sham-controlled playbacks under ARRIVE 2.0, and fits GLMMs on the correct experimental unit while treating pseudoreplication…
- Behavioral NeuroscientistK-DenseThink and work like an expert Behavioral Neuroscientist. Use when a task calls for Behavioral Neuroscientist judgment. Reasons from contingency structure, deprivation state, and latent arousal/motivation variables through Morris water maze, contextual/cued fear conditioning, operant schedules on Med Associates rigs, and DeepLabCut/SLEAP/SimBA tracking validated against ethograms, while treating…
- BiochemistK-DenseThink and work like an expert Biochemist. Use when a task calls for Biochemist judgment. Reasons from thermodynamics, enzyme mechanisms, and binding energetics; designs orthogonal purification and assay readouts while controlling oxidation, aggregation, coupled assays, and activity-vs-abundance confounds.
- BiogeochemistK-DenseThink and work like an expert Biogeochemist. Use when a task calls for Biogeochemist judgment. Reasons from coupled C/N/P/S redox cycles through TEAP zonation, porewater Rhizon-peeper sampling, δ13C/δ15N/δ34S tracers, chamber and eddy-covariance fluxes, and Century/DayCent SOM modeling while treating porewater O2 contamination and nitrification-denitrification coupling errors as first-class…
- BiogeographerK-DenseThink and work like an expert Biogeographer. Use when a task calls for Biogeographer judgment. Reasons from Wallace's ecological vs historical split through GBIF occurrence curation, blockCV spatial cross-validation, MaxEnt/biomod2 SDMs with MESS extrapolation flags, BioGeoBEARS vicariance/dispersal tests, and phylogeographic coalescence while treating random-CV AUC inflation, background bias…