Msa Search Nim

NVIDIAOfficial

Generate multiple sequence alignments (MSAs) for protein sequences using the ColabFold MSA-Search NIM. Use for homolog search, UniRef30/ColabFold env searches, A3M or FASTA alignments, paired MSA search for complexes, PDB70 structural templates, hosted NVIDIA API calls, or local Docker deployment.

Install

npx skills add NVIDIA/skills --skill msa-search-nim

npx skills add NVIDIA/skills --skill msa-search-nim -a claude-code -g

npx skills add NVIDIA/skills --skill msa-search-nim -a codex -g

gemini skills install https://github.com/NVIDIA/skills.git --path skills/bionemo-msa-search-nim

gh skill install NVIDIA/skills msa-search-nim

git clone --depth 1 https://github.com/NVIDIA/skills /tmp/NVIDIA__skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/NVIDIA__skills/skills/bionemo-msa-search-nim ~/.claude/skills/msa-search-nim   # Claude Code
cp -R /tmp/NVIDIA__skills/skills/bionemo-msa-search-nim ~/.agents/skills/msa-search-nim   # Codex, Cursor, Gemini CLI, Copilot, OpenCode

Install

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