Kick off public 16S, 18S, ITS, COI, or other marker-gene amplicon microbiome workflows using nf-core/ampliseq, QIIME2, DADA2, and Cutadapt.
Install
npx skills add openai/plugins --skill ngs-amplicon-microbiomenpx skills add openai/plugins --skill ngs-amplicon-microbiome -a claude-code -gnpx skills add openai/plugins --skill ngs-amplicon-microbiome -a codex -ggemini skills install https://github.com/openai/plugins.git --path plugins/ngs-analysis/skills/ngs-amplicon-microbiomegh skill install openai/plugins ngs-amplicon-microbiomegit clone --depth 1 https://github.com/openai/plugins /tmp/openai__plugins
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/openai__plugins/plugins/ngs-analysis/skills/ngs-amplicon-microbiome ~/.claude/skills/ngs-amplicon-microbiome # Claude Code
cp -R /tmp/openai__plugins/plugins/ngs-analysis/skills/ngs-amplicon-microbiome ~/.agents/skills/ngs-amplicon-microbiome # Codex, Cursor, Gemini CLI, Copilot, OpenCode