Run or plan bulk RNA-seq FASTQ-to-count processing with sample-sheet, strandedness, genome annotation, alignment or pseudoalignment, MultiQC, and count-matrix QC checks.
Install
npx skills add openai/plugins --skill ngs-bulk-rnaseq-counts-qcnpx skills add openai/plugins --skill ngs-bulk-rnaseq-counts-qc -a claude-code -gnpx skills add openai/plugins --skill ngs-bulk-rnaseq-counts-qc -a codex -ggemini skills install https://github.com/openai/plugins.git --path plugins/ngs-analysis/skills/ngs-bulk-rnaseq-counts-qcgh skill install openai/plugins ngs-bulk-rnaseq-counts-qcgit clone --depth 1 https://github.com/openai/plugins /tmp/openai__plugins
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/openai__plugins/plugins/ngs-analysis/skills/ngs-bulk-rnaseq-counts-qc ~/.claude/skills/ngs-bulk-rnaseq-counts-qc # Claude Code
cp -R /tmp/openai__plugins/plugins/ngs-analysis/skills/ngs-bulk-rnaseq-counts-qc ~/.agents/skills/ngs-bulk-rnaseq-counts-qc # Codex, Cursor, Gemini CLI, Copilot, OpenCode