Validate FASTQ inputs, run local FastQC/MultiQC QC, interpret QC signals, and optionally execute fastp or Cutadapt trimming branches without overwriting raw reads.
Install
npx skills add openai/plugins --skill ngs-fastq-qcnpx skills add openai/plugins --skill ngs-fastq-qc -a claude-code -gnpx skills add openai/plugins --skill ngs-fastq-qc -a codex -ggemini skills install https://github.com/openai/plugins.git --path plugins/ngs-analysis/skills/ngs-fastq-qcgh skill install openai/plugins ngs-fastq-qcgit clone --depth 1 https://github.com/openai/plugins /tmp/openai__plugins
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/openai__plugins/plugins/ngs-analysis/skills/ngs-fastq-qc ~/.claude/skills/ngs-fastq-qc # Claude Code
cp -R /tmp/openai__plugins/plugins/ngs-analysis/skills/ngs-fastq-qc ~/.agents/skills/ngs-fastq-qc # Codex, Cursor, Gemini CLI, Copilot, OpenCode