Kick off public shotgun metagenomics QC, host-depletion, taxonomic profiling, and functional profiling workflows using nf-core/taxprofiler, Kraken2, Bracken, MetaPhlAn, and HUMAnN.
Install
npx skills add openai/plugins --skill ngs-shotgun-metagenomicsnpx skills add openai/plugins --skill ngs-shotgun-metagenomics -a claude-code -gnpx skills add openai/plugins --skill ngs-shotgun-metagenomics -a codex -ggemini skills install https://github.com/openai/plugins.git --path plugins/ngs-analysis/skills/ngs-shotgun-metagenomicsgh skill install openai/plugins ngs-shotgun-metagenomicsgit clone --depth 1 https://github.com/openai/plugins /tmp/openai__plugins
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/openai__plugins/plugins/ngs-analysis/skills/ngs-shotgun-metagenomics ~/.claude/skills/ngs-shotgun-metagenomics # Claude Code
cp -R /tmp/openai__plugins/plugins/ngs-analysis/skills/ngs-shotgun-metagenomics ~/.agents/skills/ngs-shotgun-metagenomics # Codex, Cursor, Gemini CLI, Copilot, OpenCode