Queries public GenSpectrum LAPIS data for pathogen genomic surveillance, current lineage nomenclature, weekly sequence proportions, reporting delays, and descriptive mutation frequencies. Use for variant surveillance, Pango lineage validation, dominant submitted lineages, Nextclade assignment provenance, SARS-CoV-2, influenza/H5N1 clades, RSV, mpox, measles, dengue, or LAPIS queries.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pathogen-variant-surveillancenpx skills add K-Dense-AI/scientific-agent-skills --skill pathogen-variant-surveillance -a claude-code -gnpx skills add K-Dense-AI/scientific-agent-skills --skill pathogen-variant-surveillance -a codex -ggemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/pathogen-variant-surveillancegh skill install K-Dense-AI/scientific-agent-skills pathogen-variant-surveillancegit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills /tmp/K-Dense-AI__scientific-agent-skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/pathogen-variant-surveillance ~/.claude/skills/pathogen-variant-surveillance # Claude Code
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/pathogen-variant-surveillance ~/.agents/skills/pathogen-variant-surveillance # Codex, Cursor, Gemini CLI, Copilot, OpenCode