Pydeseq2

K-Dense

Performs bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests, FDR correction, coefficient-matched LFC shrinkage, and result visualization. Use for PyDESeq2 or Python DESeq2 workflows with biological replicates.

Install

npx skills add K-Dense-AI/scientific-agent-skills --skill pydeseq2

npx skills add K-Dense-AI/scientific-agent-skills --skill pydeseq2 -a claude-code -g

npx skills add K-Dense-AI/scientific-agent-skills --skill pydeseq2 -a codex -g

gemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/pydeseq2

gh skill install K-Dense-AI/scientific-agent-skills pydeseq2

git clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills /tmp/K-Dense-AI__scientific-agent-skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/pydeseq2 ~/.claude/skills/pydeseq2   # Claude Code
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/pydeseq2 ~/.agents/skills/pydeseq2   # Codex, Cursor, Gemini CLI, Copilot, OpenCode

Install

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