Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal processing, feature detection, peptide identification, and quantitative analysis.
Install
npx skills add davila7/claude-code-templates --skill pyopenmsnpx skills add davila7/claude-code-templates --skill pyopenms -a claude-code -gnpx skills add davila7/claude-code-templates --skill pyopenms -a codex -ggemini skills install https://github.com/davila7/claude-code-templates.git --path cli-tool/components/skills/scientific/pyopenmsgh skill install davila7/claude-code-templates pyopenmsgit clone --depth 1 https://github.com/davila7/claude-code-templates /tmp/davila7__claude-code-templates
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/pyopenms ~/.claude/skills/pyopenms # Claude Code
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/pyopenms ~/.agents/skills/pyopenms # Codex, Cursor, Gemini CLI, Copilot, OpenCode