Processes mass spectrometry data with pyOpenMS. Supports proteomics and metabolomics workflows—feature detection, peptide/protein identification, label-free quantification, adduct/accurate-mass annotation, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. For simple spectral comparison and small-molecule library matching use matchms.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pyopenmsnpx skills add K-Dense-AI/scientific-agent-skills --skill pyopenms -a claude-code -gnpx skills add K-Dense-AI/scientific-agent-skills --skill pyopenms -a codex -ggemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/pyopenmsgh skill install K-Dense-AI/scientific-agent-skills pyopenmsgit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills /tmp/K-Dense-AI__scientific-agent-skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/pyopenms ~/.claude/skills/pyopenms # Claude Code
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/pyopenms ~/.agents/skills/pyopenms # Codex, Cursor, Gemini CLI, Copilot, OpenCode