Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.
Install
npx skills add davila7/claude-code-templates --skill pysamnpx skills add davila7/claude-code-templates --skill pysam -a claude-code -gnpx skills add davila7/claude-code-templates --skill pysam -a codex -ggemini skills install https://github.com/davila7/claude-code-templates.git --path cli-tool/components/skills/scientific/pysamgh skill install davila7/claude-code-templates pysamgit clone --depth 1 https://github.com/davila7/claude-code-templates /tmp/davila7__claude-code-templates
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/pysam ~/.claude/skills/pysam # Claude Code
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/pysam ~/.agents/skills/pysam # Codex, Cursor, Gemini CLI, Copilot, OpenCode