Provides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM references.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pysamnpx skills add K-Dense-AI/scientific-agent-skills --skill pysam -a claude-code -gnpx skills add K-Dense-AI/scientific-agent-skills --skill pysam -a codex -ggemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/pysamgh skill install K-Dense-AI/scientific-agent-skills pysamgit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills /tmp/K-Dense-AI__scientific-agent-skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/pysam ~/.claude/skills/pysam # Claude Code
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/pysam ~/.agents/skills/pysam # Codex, Cursor, Gemini CLI, Copilot, OpenCode