Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
Install
npx skills add davila7/claude-code-templates --skill scanpynpx skills add davila7/claude-code-templates --skill scanpy -a claude-code -gnpx skills add davila7/claude-code-templates --skill scanpy -a codex -ggemini skills install https://github.com/davila7/claude-code-templates.git --path cli-tool/components/skills/scientific/scanpygh skill install davila7/claude-code-templates scanpygit clone --depth 1 https://github.com/davila7/claude-code-templates /tmp/davila7__claude-code-templates
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/scanpy ~/.claude/skills/scanpy # Claude Code
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/scanpy ~/.agents/skills/scanpy # Codex, Cursor, Gemini CLI, Copilot, OpenCode