Process, quality-control, annotate, and visualize single-cell or single-nucleus RNA-seq datasets across tissues and species. Use when Codex needs to build, adapt, or review a general scRNA-seq QC pipeline; choose dataset-appropriate cell-level filters from QC distributions; run required scDblFinder-based doublet and ambient-RNA filtering; annotate cells with matched references or marker-based…
Install
npx skills add openai/plugins --skill scrna-seq-qcnpx skills add openai/plugins --skill scrna-seq-qc -a claude-code -gnpx skills add openai/plugins --skill scrna-seq-qc -a codex -ggemini skills install https://github.com/openai/plugins.git --path plugins/ngs-analysis/skills/scrna-seq-qcgh skill install openai/plugins scrna-seq-qcgit clone --depth 1 https://github.com/openai/plugins /tmp/openai__plugins
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/openai__plugins/plugins/ngs-analysis/skills/scrna-seq-qc ~/.claude/skills/scrna-seq-qc # Claude Code
cp -R /tmp/openai__plugins/plugins/ngs-analysis/skills/scrna-seq-qc ~/.agents/skills/scrna-seq-qc # Codex, Cursor, Gemini CLI, Copilot, OpenCode