Comprehensive metabolic landscape analysis pipeline for scRNA-seq data. This is an all-in-one process group performing complete metabolic pathway analysis including expression imputation, feature selection, pathway activity calculation, and heterogeneity analysis. Based on methodology from Xiao et al.
Install
npx skills add pwwang/immunopipe --skill scrnametaboliclandscapenpx skills add pwwang/immunopipe --skill scrnametaboliclandscape -a claude-code -gnpx skills add pwwang/immunopipe --skill scrnametaboliclandscape -a codex -ggemini skills install https://github.com/pwwang/immunopipe.git --path skills/scrnametaboliclandscapegh skill install pwwang/immunopipe scrnametaboliclandscapegit clone --depth 1 https://github.com/pwwang/immunopipe /tmp/pwwang__immunopipe
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/pwwang__immunopipe/skills/scrnametaboliclandscape ~/.claude/skills/scrnametaboliclandscape # Claude Code
cp -R /tmp/pwwang__immunopipe/skills/scrnametaboliclandscape ~/.agents/skills/scrnametaboliclandscape # Codex, Cursor, Gemini CLI, Copilot, OpenCode