Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq multi-modal analysis with totalVI, (4) multiome RNA+ATAC analysis with MultiVI, (5) spatial transcriptomics deconvolution with DestVI, (6) label transfer and reference mapping with…
Install
npx skills add anthropics/knowledge-work-plugins --skill scvi-toolsnpx skills add anthropics/knowledge-work-plugins --skill scvi-tools -a claude-code -gnpx skills add anthropics/knowledge-work-plugins --skill scvi-tools -a codex -ggemini skills install https://github.com/anthropics/knowledge-work-plugins.git --path bio-research/skills/scvi-toolsgh skill install anthropics/knowledge-work-plugins scvi-toolsgit clone --depth 1 https://github.com/anthropics/knowledge-work-plugins /tmp/anthropics__knowledge-work-plugins
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/anthropics__knowledge-work-plugins/bio-research/skills/scvi-tools ~/.claude/skills/scvi-tools # Claude Code
cp -R /tmp/anthropics__knowledge-work-plugins/bio-research/skills/scvi-tools ~/.agents/skills/scvi-tools # Codex, Cursor, Gemini CLI, Copilot, OpenCode