This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.
Install
npx skills add davila7/claude-code-templates --skill scvi-toolsnpx skills add davila7/claude-code-templates --skill scvi-tools -a claude-code -gnpx skills add davila7/claude-code-templates --skill scvi-tools -a codex -ggemini skills install https://github.com/davila7/claude-code-templates.git --path cli-tool/components/skills/scientific/scvi-toolsgh skill install davila7/claude-code-templates scvi-toolsgit clone --depth 1 https://github.com/davila7/claude-code-templates /tmp/davila7__claude-code-templates
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/scvi-tools ~/.claude/skills/scvi-tools # Claude Code
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/scvi-tools ~/.agents/skills/scvi-tools # Codex, Cursor, Gemini CLI, Copilot, OpenCode