Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.
Install
npx skills add anthropics/knowledge-work-plugins --skill single-cell-rna-qcnpx skills add anthropics/knowledge-work-plugins --skill single-cell-rna-qc -a claude-code -gnpx skills add anthropics/knowledge-work-plugins --skill single-cell-rna-qc -a codex -ggemini skills install https://github.com/anthropics/knowledge-work-plugins.git --path bio-research/skills/single-cell-rna-qcgh skill install anthropics/knowledge-work-plugins single-cell-rna-qcgit clone --depth 1 https://github.com/anthropics/knowledge-work-plugins /tmp/anthropics__knowledge-work-plugins
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/anthropics__knowledge-work-plugins/bio-research/skills/single-cell-rna-qc ~/.claude/skills/single-cell-rna-qc # Claude Code
cp -R /tmp/anthropics__knowledge-work-plugins/bio-research/skills/single-cell-rna-qc ~/.agents/skills/single-cell-rna-qc # Codex, Cursor, Gemini CLI, Copilot, OpenCode