Calculates technical mapping statistics for any aligned BAM file (ChIP or ATAC). It assesses the performance of the aligner itself by generating metrics on read depth, mapping quality, error rates, and read group data using samtools and Picard.Use this skill to check "how well the reads mapped" or to validate BAM formatting/sorting before further processing.
安装
npx skills add BIsnake2001/ChromSkills --skill alignment-level-QCnpx skills add BIsnake2001/ChromSkills --skill alignment-level-QC -a claude-code -gnpx skills add BIsnake2001/ChromSkills --skill alignment-level-QC -a codex -ggemini skills install https://github.com/BIsnake2001/ChromSkills.git --path 1.alignment-level-QCgh skill install BIsnake2001/ChromSkills alignment-level-QCgit clone --depth 1 https://github.com/BIsnake2001/ChromSkills /tmp/BIsnake2001__ChromSkills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/BIsnake2001__ChromSkills/1.alignment-level-QC ~/.claude/skills/alignment-level-QC # Claude Code
cp -R /tmp/BIsnake2001__ChromSkills/1.alignment-level-QC ~/.agents/skills/alignment-level-QC # Codex, Cursor, Gemini CLI, Copilot, OpenCode