Infer gene regulatory networks (GRNs) from expression matrices using arboreto's scalable GRNBoost2 and GENIE3 tree-ensemble algorithms with Dask-distributed computation. Use when analyzing bulk or single-cell RNA-seq transcriptomics to map transcription-factor-to-target-gene regulatory interactions, build adjacency networks, or run the GRN-inference step of a SCENIC pipeline on large datasets.
安装
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-arboretonpx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-arboreto -a claude-code -gnpx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-arboreto -a codex -ggemini skills install https://github.com/AlterLab-IEU/AlterLab-Academic-Skills.git --path skills/bioinformatics/alterlab-arboretogh skill install AlterLab-IEU/AlterLab-Academic-Skills alterlab-arboretogit clone --depth 1 https://github.com/AlterLab-IEU/AlterLab-Academic-Skills /tmp/AlterLab-IEU__AlterLab-Academic-Skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-arboreto ~/.claude/skills/alterlab-arboreto # Claude Code
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-arboreto ~/.agents/skills/alterlab-arboreto # Codex, Cursor, Gemini CLI, Copilot, OpenCode