Quantifies bulk RNA-seq transcript abundance with salmon 2.x (the Rust rewrite; selective alignment or --sketch) and kallisto (v0.52.0, kb-python workflow), builds a decoy-aware gentrome index, runs quant with --gcBias -l A, then imports estimates via tximport/tximeta with a tx2gene map and hands differential expression to alterlab-pydeseq2.
安装
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-rnaseq-quantnpx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-rnaseq-quant -a claude-code -gnpx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-rnaseq-quant -a codex -ggemini skills install https://github.com/AlterLab-IEU/AlterLab-Academic-Skills.git --path skills/bioinformatics/alterlab-rnaseq-quantgh skill install AlterLab-IEU/AlterLab-Academic-Skills alterlab-rnaseq-quantgit clone --depth 1 https://github.com/AlterLab-IEU/AlterLab-Academic-Skills /tmp/AlterLab-IEU__AlterLab-Academic-Skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-rnaseq-quant ~/.claude/skills/alterlab-rnaseq-quant # Claude Code
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-rnaseq-quant ~/.agents/skills/alterlab-rnaseq-quant # Codex, Cursor, Gemini CLI, Copilot, OpenCode