Analyzes spatial transcriptomics with squidpy (1.8.x) on AnnData and SpatialData objects, routing platforms correctly: Visium spots use spatial_neighbors(coord_type='grid') and pair with deconvolution, while Xenium/MERFISH single-cell data use coord_type='generic'/Delaunay neighbors and spatialdata-io readers (xenium, visium_hd, merscope).
安装
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-squidpy-spatialnpx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-squidpy-spatial -a claude-code -gnpx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-squidpy-spatial -a codex -ggemini skills install https://github.com/AlterLab-IEU/AlterLab-Academic-Skills.git --path skills/bioinformatics/alterlab-squidpy-spatialgh skill install AlterLab-IEU/AlterLab-Academic-Skills alterlab-squidpy-spatialgit clone --depth 1 https://github.com/AlterLab-IEU/AlterLab-Academic-Skills /tmp/AlterLab-IEU__AlterLab-Academic-Skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-squidpy-spatial ~/.claude/skills/alterlab-squidpy-spatial # Claude Code
cp -R /tmp/AlterLab-IEU__AlterLab-Academic-Skills/skills/bioinformatics/alterlab-squidpy-spatial ~/.agents/skills/alterlab-squidpy-spatial # Codex, Cursor, Gemini CLI, Copilot, OpenCode