Science & Research
723 results
- Pinecone ResearchNousResearchAgent RAG and long-term memory with Pinecone.
- N8n Conventionsn8n-ioQuick reference for n8n patterns. Full docs /AGENTS.md
- Academic ResearchershubhamsabooAcademic research assistant for literature reviews, paper analysis, and scholarly writing. Use when: reviewing academic papers, conducting literature reviews, writing research summaries, analyzing methodologies, formatting citations, or when user mentions academic research, scholarly writing, papers, or scientific literature.
- Fs Notebook Tabsnexu-ioA computer-science capstone: an on-device ML keyboard that predicts next words privately — problem, method, evaluation, and defense answers. Built as a decision-grade coursework defense deck for professor, defense committee.
- Gsap Pluginsnexu-ioOfficial GSAP skill for GSAP plugins — registration, ScrollToPlugin, ScrollSmoother, Flip, Draggable, Inertia, Observer, SplitText, ScrambleText, SVG and physics plugins, CustomEase, EasePack, CustomWiggle, CustomBounce, GSDevTools. Use when the user asks about a GSAP plugin, scroll-to, flip animations, draggable, SVG drawing, or plugin registration.
- Shader Devnexu-ioGLSL shader techniques for ray marching, fluid simulation, particle systems, and procedural generation. Useful for hero visuals and motion stills.
- Smart ExplorethedotmackToken-optimized structural code search using tree-sitter AST parsing. Use instead of reading full files when you need to understand code structure, find functions, or explore a codebase efficiently.
- Academic Paper ReviewbytedanceUse this skill when the user requests to review, analyze, critique, or summarize academic papers, research articles, preprints, or scientific publications. Supports comprehensive structured reviews covering methodology assessment, contribution evaluation, literature positioning, and constructive feedback generation.
- Hyperplancode-yeongyuAdversarial multi-agent planning skill. Self-orchestrates 5 hostile category members (unspecified-low, unspecified-high, deep, ultrabrain, artistry) via team-mode for ruthless cross-critique debate, distills only the defensible insights, then MANDATORILY hands the distilled insight bundle to the `plan` agent for executable plan formalization.
- Maps GeographyasgeirtjAccurate maps from real geo data — use for any map, or whenever geography would make a good graphic for a deliverable
- Cli Anything 3mfHKUDS3MF mesh geometry editor — detect and resize cylindrical holes, repair meshes, compare 3D printing files. Works with BambuStudio and PrusaSlicer 3MF files.
- Cli Anything ThreemfHKUDS3MF mesh geometry editor — detect and resize cylindrical holes, repair meshes, compare 3D printing files. Works with BambuStudio and PrusaSlicer 3MF files.
- Cli Anything Unimol ToolsHKUDSInteractive CLI for Uni-Mol molecular property prediction training and inference workflows.
- Alphafold DatabaseK-DenseAccess AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
- AlphagenomeK-DenseLooks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), scores variants or scans windows on demand with the AlphaGenome model for human and mouse (variant scoring, in…
- AnndataK-DenseHandles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
- AstropyK-DenseCore Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time systems, WCS, and cosmology. Use when implementing or debugging astronomical data analysis code with Astropy.
- AutoskillK-DenseAnalyzes user-requested Screenpipe history windows to detect repeated research workflows, match existing scientific skills, and stage new skill drafts or composition recipes for review. Requires a reachable Screenpipe HTTP API, normally on localhost:3030. Detection and embedding inference run locally; the selected LLM receives redacted app/title cluster summaries and matched skill descriptions.
- Bgpt Paper SearchK-DenseSearches BGPT scientific papers by topic or DOI and retrieves claim-level evidence extracted from full text, including experiments, reported statistics, scope, limitations, and provenance. Use for literature reviews, evidence synthesis, and finding experimental details beyond abstracts.
- BiopythonK-DenseProvides Biopython workflows for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Supports batch processing, custom molecular-biology pipelines, BLAST automation, structure analysis, and motif analysis.
- BiopythonK-DenseComprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
- BioservicesK-DenseUnified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
- BioservicesK-DenseProvides a Python interface to bioinformatics services including UniProt, KEGG, ChEMBL, Reactome, QuickGO, and UniChem. Used for cross-database protein annotation, pathway retrieval, chemical identifier mapping, and integrated biological data workflows with BioServices.
- Bulk RnaseqK-DensePrepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2.