Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
Install
npx skills add davila7/claude-code-templates --skill etetoolkitnpx skills add davila7/claude-code-templates --skill etetoolkit -a claude-code -gnpx skills add davila7/claude-code-templates --skill etetoolkit -a codex -ggemini skills install https://github.com/davila7/claude-code-templates.git --path cli-tool/components/skills/scientific/etetoolkitgh skill install davila7/claude-code-templates etetoolkitgit clone --depth 1 https://github.com/davila7/claude-code-templates /tmp/davila7__claude-code-templates
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/etetoolkit ~/.claude/skills/etetoolkit # Claude Code
cp -R /tmp/davila7__claude-code-templates/cli-tool/components/skills/scientific/etetoolkit ~/.agents/skills/etetoolkit # Codex, Cursor, Gemini CLI, Copilot, OpenCode