Fits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, and posterior differential expression. Use for generative modeling, reference mapping, multimodal analysis, or model-based uncertainty; use scanpy for standard preprocessing and exploratory analysis.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill scvi-toolsnpx skills add K-Dense-AI/scientific-agent-skills --skill scvi-tools -a claude-code -gnpx skills add K-Dense-AI/scientific-agent-skills --skill scvi-tools -a codex -ggemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/scvi-toolsgh skill install K-Dense-AI/scientific-agent-skills scvi-toolsgit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills /tmp/K-Dense-AI__scientific-agent-skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/scvi-tools ~/.claude/skills/scvi-tools # Claude Code
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/scvi-tools ~/.agents/skills/scvi-tools # Codex, Cursor, Gemini CLI, Copilot, OpenCode