Builds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and FastTree approximate inference. Uses ETE3 for tree summaries and visualization. Applies to homologous nucleotide or protein sequences, microbial gene trees, protein families, and cautiously interpreted dated phylogenies.
安装
npx skills add K-Dense-AI/scientific-agent-skills --skill phylogeneticsnpx skills add K-Dense-AI/scientific-agent-skills --skill phylogenetics -a claude-code -gnpx skills add K-Dense-AI/scientific-agent-skills --skill phylogenetics -a codex -ggemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/phylogeneticsgh skill install K-Dense-AI/scientific-agent-skills phylogeneticsgit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills /tmp/K-Dense-AI__scientific-agent-skills
mkdir -p ~/.claude/skills ~/.agents/skills
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/phylogenetics ~/.claude/skills/phylogenetics # Claude Code
cp -R /tmp/K-Dense-AI__scientific-agent-skills/skills/phylogenetics ~/.agents/skills/phylogenetics # Codex, Cursor, Gemini CLI, Copilot, OpenCode